Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs12693144 chr2:178798789 C/T 4.13E-5 494 30.77 31.93 20.48 KM Plot
PRAD rs12693145 chr2:178800419 A/C 4.13E-5 494 30.77 31.93 20.48 KM Plot
PRAD rs12702533 chr7:6715935 C/T 4.32E-11 484 30.97 27.77 38.33 KM Plot
PRAD rs12702534 chr7:6733945 A/G 2.97E-7 494 31.13 27.03 50.03 KM Plot
PRAD rs12721076 chr19:45450252 T/C 1.27E-5 484 30.33 31 45.2 KM Plot
PRAD rs12758600 chr1:31757168 C/G 2.29E-6 493 22.83 31.27 31.27 KM Plot
PRAD rs1276297 chr1:68257894 A/G 0.000146 494 34.55 29.18 31.07 KM Plot
PRAD rs1276302 chr1:68260657 A/C 0.000165 484 30.87 30.27 36.87 KM Plot
PRAD rs1276310 chr1:68264900 G/T 8.1E-5 488 31.13 29.4 34.55 KM Plot
PRAD rs1276313 chr1:68266754 A/G 5.61E-5 494 32.23 29.32 31 KM Plot
PRAD rs1276315 chr1:68268332 G/A 8.07E-5 492 30.97 29.32 34.55 KM Plot
PRAD rs1276317 chr1:68271666 A/G 0.000147 488 30.93 29.23 37.37 KM Plot
PRAD rs12789787 chr11:24247560 A/G 0.000159 494 20.47 31.37 30.97 KM Plot
PRAD rs12799052 chr11:24229768 A/G 0.000115 489 30.93 31.32 22.92 KM Plot
PRAD rs12799091 chr11:24229830 A/G 0.000115 489 30.93 31.32 22.92 KM Plot